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General discussions (Q&As) / plot to show DNA conformation
« on: March 06, 2013, 07:55:39 am »
BS"D
Dear All,
I would like to create a plot along the lines of protein Ramachandran plot, where one could see changes in the conformation of the DNA. So one could look at the plot and see that the ds DNA was ideal B DNA, or perhaps A DNA, or something else. I want to see how a given stretch of ds DNA changes during an MD simulation, and whether it goes from one type to another. Couldn't really see a previous example of this in the manual....
Thanks
Harry
Dear All,
I would like to create a plot along the lines of protein Ramachandran plot, where one could see changes in the conformation of the DNA. So one could look at the plot and see that the ds DNA was ideal B DNA, or perhaps A DNA, or something else. I want to see how a given stretch of ds DNA changes during an MD simulation, and whether it goes from one type to another. Couldn't really see a previous example of this in the manual....
Thanks
Harry