Messages

1

General discussions (Q&As) / Re: runing x3dna for CG dna structure (without base-pairing information)

« on: January 23, 2020, 03:49:49 am »

Dear Xiang-Jun,
thanks for your response. Could you share some steps to the utility in 3DNA which can take P atoms (see 22 CG B-DNA structure in attachment) and reconstruct a full atomistic structure based on a CG model. I would really appreciate some help as the wDNA does not support such right away structure loading.
best,
adolfo

2

General discussions (Q&As) / runing x3dna for CG dna structure (without base-pairing information)

« on: January 21, 2020, 07:11:45 am »

Dear all,
I am new in this community. Here my question, will it be possible get global helical parameters (e.g. mino/major groove, pitch, rise,..) for a coarse grained double-helix DNA structure using only the P atoms for each residue?
Thanks for your help!
Adolfo