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RNA structures (DSSR) / Re: Web 3DNA Error
« on: October 18, 2018, 01:43:45 pm »
Perfect!

Thank you for your quick replies. It works really well with DSSR.

Replacing the "A3" residues to "A" also works on the web 3DNA interface.


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RNA structures (DSSR) / Web 3DNA Error
« on: October 18, 2018, 11:29:04 am »
Hi,

I'm a very new user. I'd like to use 3DNA as a tool to analyze RNA structures after they have undergone MD simulations.

As a quick test, I tried to analyze a pdb from my trajectory on the web interface Web 3DNA, but I get the following error: "Loading...Please wait. unable to open file pdbid.inps"

Do any of you know what I'm doing wrong? Is there anything I can modify in the pdb itself to make the analysis work?

Thank you for your help.

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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University