Show Posts

This section allows you to view all posts made by this member. Note that you can only see posts made in areas you currently have access to.


Netiquette · Download · News · Gallery · Homepage · DSSR Manual · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · DSSR Licensing · Video Overview· RNA Covers

Messages - elodiem

Pages: [1]
1
RNA structures (DSSR) / Re: automatically count the number of nucleotides involved in RNA helices
« on: July 27, 2018, 06:55:37 am »

Hello,
yes it is right. I just want to generate an excel file telling me exactly the number of nucleotides per helices to do some statistic. Do you think it is possible?
thanks

2
RNA structures (DSSR) / automatically count the number of nucleotides involved in RNA helices
« on: July 26, 2018, 10:11:31 pm »
Hello,
I have determined reactivities of approximately 2000 nucleotides of several RNA samples using SHAPE and generated dot bracket files. I am able to fold RNAs using these reactivities using RNA structure but I also would like to automatically determine the position and the number of nucleotides involved in helices. Is it possible to do this type of analysis with a software?

thanks for your help

Pages: [1]

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.