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General discussions (Q&As) / Re: Adding missing residue in PDB file of RNA

« on: February 08, 2017, 11:30:00 am »

Dear xiangjun,

Thanks for your reply and concern.
This is a great platform to use.
Best of luck for your future endeavor.

2

General discussions (Q&As) / Adding missing residue in PDB file of RNA

« on: February 08, 2017, 11:09:32 am »

Hello Everyone,


I have a PDB file for RNA. Co-ordinates of 8 nucleotide residues are missing in the pdb file. I know the missing sequence of residues. I need the co-ordinates of complete RNA sequence. Can I add the missing residue and create a modified PDB file of complete sequence using x3DNA ?


Sequence :  GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAA
UCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGG--(AUGCUUGU)--CCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA

The region in bracket is missing in PDB file.

Requirement : PDB file of complete sequence.
Thanks.