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Messages - akakios
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1
« on: December 07, 2020, 08:00:00 pm »
Dr. Xiang-Jun Lu,
Maybe now I got what I wanted to know. I appreciate it. Thank you.
Takayuki
2
« on: December 07, 2020, 05:01:24 pm »
Thank you for the clarification. Stack example is like the following:
***************************************************************************
List of 2 base/amino-acid stacks
id nt-aa nt aa vertical-distance plane-angle
1 1oct T-gln A.DT203 C.GLN44 3.79 1
2 1oct G-arg B.DG225 C.ARG105 3.31
3
« on: December 07, 2020, 11:09:51 am »
It is about the two sections around the end of SNAP outputs Like below:
Pairs and stacks. Thank you.
****************************************************************************
List of 7 base/amino-acid pairs
id nt-aa nt aa vertical-distance plane-angle
1 1oct A-gln A.DA204 C.GLN44 0.05
****************************************************************************
List of 2 base/amino-acid stacks
4
« on: December 06, 2020, 09:09:17 pm »
Dr. Xiang-Jun Lu,
Thank you for the amazing software. I am using it for my research.
I tried to find the definition of pi-stack and pi-pair in the output of SNAP but
could not find it.
Could you tell me the difference or the docs describing about it, please?
Takayuki Kimura
Ph.D. candidate, Tokyo Institute of Technology
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Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University
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