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General discussions (Q&As) / Single stranded DNA simulation
« on: June 03, 2013, 01:42:43 pm »
Dear All,
I need to simulate the behaviour (with 3D visualization) of many arbitrary designed variable sized single stranded DNA in solution. This includes double helix formation among single stranded DNA, hairy pin in one single stranded DNA, etc.
I am new to 3DNA and I would like to know if it is possible to do what I need with this software. If not, what would you suggest ? Probably any kinetic Monte Carlo implementation around ?
Kind regards and many thanks in advance.
I need to simulate the behaviour (with 3D visualization) of many arbitrary designed variable sized single stranded DNA in solution. This includes double helix formation among single stranded DNA, hairy pin in one single stranded DNA, etc.
I am new to 3DNA and I would like to know if it is possible to do what I need with this software. If not, what would you suggest ? Probably any kinetic Monte Carlo implementation around ?
Kind regards and many thanks in advance.