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General discussions (Q&As) / stability of rna structure
« on: February 09, 2009, 05:41:54 am »
Dear 3DNA friends,
I have a multiple models of a RNA duplex obtained after clustering of MD trjectory. The RNA is a folded structure and I am not sure if i can chose the best based on structural parameters alone as it is surely is going to give odd values. Can someone please write me how i can do it. Herewith i have attached the pdb of the RNA for your perusal. Also, is there any way/script to calculate the deformation energy for RNA.
Thanks in advance,
Balasubramanian.
I have a multiple models of a RNA duplex obtained after clustering of MD trjectory. The RNA is a folded structure and I am not sure if i can chose the best based on structural parameters alone as it is surely is going to give odd values. Can someone please write me how i can do it. Herewith i have attached the pdb of the RNA for your perusal. Also, is there any way/script to calculate the deformation energy for RNA.
Thanks in advance,
Balasubramanian.