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General discussions (Q&As) / Conversions

« on: March 23, 2011, 09:53:47 am »

I am currently working on a project that requires X3DNA. The project is using programs such as VMD and RasMol to create duplexes of DNA strands; one which is phosphorous based and the other which is arsenic based. Once the structures are created they are then converted using OpenBabel from a .xyz file to a .pdb or vice versa. However, X3DNA is unable to run in the converted files. I was wondering if X3DNA was capable of converting the files itself, and if not would you be willing to point me in the direction of some other file converter that might work better.