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MD simulations / Do I need gromacs to use dnaMD for simulations?
« on: Yesterday at 05:50:16 am »
Hi all,
Thanks for the x3DNA-DSSR software which works wonderfully for single PDBs.
I have some MD simulations I would like to analyze with dnaMD. I ran them with Amber but converted them to GROMACS .xtc + .pdb files for analysis.
Do I need GROMACS version of dnaMD to analyze simulations or can I use the Python module of dnaMD without GROMACS for simulations?
PS. I am also lacking the link to download the 3DNA from the forum for some reason, my forum view is similar to unregistered users.
Thanks for the x3DNA-DSSR software which works wonderfully for single PDBs.
I have some MD simulations I would like to analyze with dnaMD. I ran them with Amber but converted them to GROMACS .xtc + .pdb files for analysis.
Do I need GROMACS version of dnaMD to analyze simulations or can I use the Python module of dnaMD without GROMACS for simulations?
PS. I am also lacking the link to download the 3DNA from the forum for some reason, my forum view is similar to unregistered users.