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Questions and answers => RNA structures (DSSR) => Topic started by: amirtaghavi on May 05, 2021, 04:27:42 pm

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Title: error in rebuild command
Post by: amirtaghavi on May 05, 2021, 04:27:42 pm

Hello Dr. Xiangjun,

following the example in "np_recipes/R2_roll_bending" I am trying to use the rebuild command to create an image like those provided (Figure3_r300.png) for my RNA systems which are highly bent.

After preparing the input file to execute the following commnad:
 rebuild roll_a.dat roll_a_raw.alc
I receive an error message: unknown residue slide

so I just ran the same command on the example file provided in the "R2_roll_bending" dir (roll_a.dat) and I get the same error message.

I was wondering if I could use your help.

Thanks in forward.

Best,
Amir

Title: Re: error in rebuild command
Post by: xiangjun on May 05, 2021, 04:40:38 pm

Hi Amir,

3DNA has been completely superseded by DSSR. Due to a lack of funding support, I can no longer devote any effort on 3DNA.

DSSR Pro is the only software product I support right now. A video overview of DSSR is available at: http://docs.x3dna.org/dssr-overview/

Best regards,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University