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Questions and answers => w3DNA -- web interface to 3DNA => Topic started by: mlowe on June 24, 2020, 05:57:46 pm

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Title: Composite
Post by: mlowe on June 24, 2020, 05:57:46 pm

I am trying the composite feature of web 3DNA 2.0. I would like to use my own "template PDB." However the form appears to be searching rcsb.org. Is there a way to enter my own PDB?

Title: Re: Composite
Post by: xiangjun on June 24, 2020, 06:23:49 pm

Thanks for posting your question on the 3DNA Forum.

My understanding is that the templates for the Composite module (on the Web 3DNA 2.0 website) must be from PDB entries. Shuxiang may chime in with more details.

Best regards,

Xiang-Jun

Title: Re: Composite
Post by: xiangjun on February 11, 2021, 04:33:40 pm

Hi,

I have created a brand-new program for template-based modeling of nucleic acid structures, including DNA-protein complexes. Now users can easily specify their own templates via the command-line. This novel modeling program is distributed as a module of DSSR Pro. (http://innovation.columbia.edu/technologies/CU20391)

Best regards,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University