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Questions and answers => DNA/RNA-protein interactions (SNAP) => Topic started by: Aleix_TS on May 15, 2020, 11:58:05 am

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Title: Visualization of SNAP output
Post by: Aleix_TS on May 15, 2020, 11:58:05 am

Hi Xiangju, I have a maybe silly question. I am able to run SNAP  with my protein-DNA structure, I would like to know how could I output a diagram to visualize them on a schematic DNA structure.

Thanks

Title: Re: Visualization of SNAP output
Post by: xiangjun on May 15, 2020, 12:20:17 pm

SNAP is an analysis tool. Schematic visualization is beyond its design scope.

Have a look of http://skmatic.x3dna.org. Is there anything useful there?

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University