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Questions and answers => General discussions (Q&As) => Topic started by: sima on May 27, 2019, 12:15:48 pm

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Title: 3dna tutorial
Post by: sima on May 27, 2019, 12:15:48 pm

hi dr.xiangjun
im a new user of 3dna software
Sorry to take your time
I'm going to design a single-stranded DNA structure for designing the switches that work with the pH.
Do you have a file for full software training? Especially for the design of clamp switches.
I want to fully understand rebuild and mutate analysis of this software.
Does this software give us the possibility of protonizing the structure?
thanks for your help

Title: Re: 3dna tutorial
Post by: xiangjun on May 27, 2019, 12:19:55 pm

Quote

Do you have a file for full software training?

Check contents in $X3DNA/docs, especially the README file.

Quote

Especially for the design of clamp switches.

No.

Quote

I want to fully understand rebuild and mutate analysis of this software.
Does this software give us the possibility of protonizing the structure?

No.

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University