3DNA Forum

Questions and answers => w3DNA -- web interface to 3DNA => Topic started by: Doris on December 05, 2018, 12:56:31 am

Netiquette · Download · News · Gallery · G-quadruplexes · DSSR-Jmol · DSSR-PyMOL · Video Overview · DSSR v2.5.0 (DSSR Manual) · Homepage

Title: Can 3DNA generate PDB files of DNA containing G-T mismatch?
Post by: Doris on December 05, 2018, 12:56:31 am

Hi Xiang,
I try to generate a PDB file using double strand DNA sequence, but the G-T base pair is converted into A-T base pair automatically when I use w3DNA.
May you please guide me that how can I convert the DNA helix contained GT base pair to PDB files?
Thank you ;) .

Title: Re: Can 3DNA generate PDB files of DNA containing G-T mismatch?
Post by: xiangjun on December 05, 2018, 09:27:30 am

Hi Doris,

Please be specific with your question so others can reproduce it.

What URL did you use for w3DNA? What feature did you try, with what sequence (parameters), and got what result (PDB file)?

Best regards,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University