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Miscellaneous items => Users' contributions => Topic started by: yrxin on January 17, 2008, 09:30:21 pm

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Title: 3DNA parser
Post by: yrxin on January 17, 2008, 09:30:21 pm

Hi,

I wrote a python package to parse PDB and 3DNA output files.

Briefly speaking of this package, it reads PDB files to get structure information, such as atom, residue. It then reads output files generated by "find_pair -p" and "find_pair | analyze" to get base-pairing, base-stacking, and helical information. I have a "manual" folder showing a couple of examples.

Any kind of comments are welcome.

Yurong

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University