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Questions and answers => RNA structures (DSSR) => Topic started by: Sylverlin on November 02, 2014, 10:19:43 am

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Title: Lost info in CT output
Post by: Sylverlin on November 02, 2014, 10:19:43 am

Hello Xiang-Jun,

first of all, I think you will be glad that we cited DSSR in our poster at BIBM 2014 (Template-Based Prediction of Ribosomal RNA Secondary Structure), currently hanging on a panel in Belfast and to be published in the Workshop & Poster proceedings. :)

I have, however, run into a problem: in CT format, on PDB entry 4CXC, the '#' sign and descriptors to the right of it are missing. We do miss them. Is there an option to turn them back on?

Thanks!

Jan Hajic

Title: Re: Lost info in CT output
Post by: xiangjun on November 02, 2014, 10:50:44 am

Hi Jan Hajic,

Glad to hear yet another citation to DSSR! If possible, please send me a PDF copy of your BIBM 2014 poster. So far I am aware of two formal papers mentioning specifically DSSR.

Regarding extra information after '#' in .ct (and .bpseq) output, it is deleted by default since I noticed that some parsers won't work with such additional columns. However, with the --more option, you can still get back what you miss.

HTH,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University