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Questions and answers => General discussions (Q&As) => Topic started by: Anju Sharma on June 12, 2007, 11:47:17 pm

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Title: Problem while converting .Pdb file into .Out file
Post by: Anju Sharma on June 12, 2007, 11:47:17 pm

Hello Sir,
I have converted my .Pdb files into .Out files bt problem now m facing is wth .Out files. Now while carrying out the analysis work m facing a major problem. The DNA sequences i have given (present in .PDB files) and the one in . Out files are different. Example if in .Pdb file sequence is CGATCG thn in .Out file m getting CGATCC, also in many (almost all) if in .Pdb files there are 6 residues thn in .Out files m gettng either 4 or 3. how it is possble when the sequence is same then in some .Out files its showng jst 3 residues and in some 4 nd lk wise.

Waiting for early response, coz all work is at halt.

regards,

Anju Sharma

Title:
Post by: xiangjun on June 13, 2007, 09:28:10 pm

I do not know if I understand exactly what you mean. Why not post a specific (minimal) sample case to illustrate your point?

Also, I find it hard to read a sentence such as "its showng jst 3 residues and in some 4 nd lk wise." -- Maybe that's because English is not my native language? In some sense,   this post might help (http://http://www.catb.org/~esr/faqs/smart-questions.html).

Thanks,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University