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Dear Friends;
Hi my name is Jorge, I am from Chile and I send you this e-mail because, following your guide (3dna.pdf) step by step, & when I arrive to section "2.3 bin" I installed once the 3DNA, I try execute anyone script (see PD:) that are into bin folder, but I fail and I do not Know why =( ... to give you an Idea, in the root I am here :
me@PC: ~/Desk/3dna/v1.5/src/X3DNA/bin$ ls
alc2img cehs dcmnfile fiber get_part nmr_ensemble pdb2img regular_dna std_base analyze block_atom comb_str del_ms find_pair manalyze nmr_strs r3d_atom rotate_mol step_hel anyhelix stack2img
blocview cp_std ex_str frame_mol mstack2img o1p_o2p rebuild
I find the same that you say in the guide
"This directory contains executables of the 3DNA package. Most of which are utility programs with some in short Perl script. Detailed usage of each program is described in Section 3."
section 3 say How to run 3DNA : Running 3DNA is simple ...
=( I don't feel good for this, is not easy to me apparently
so the questions are :
1.- how to run this programs? wich is the formula or protocol?
2.- I need any enviroment to execute these ?
3.- could you help me perhaps with oriantation about to my dificulties ?
4.- wich is the next step ? am I doing something bad in the procedure ?
blessings
Jorge
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Hi Jorge,
It is surprising that 3DNA v1.5 is still being used. As noted in the download page, this ancient version is no longer supported. You are advised to download v2.1, and follow the instruction "How to install 3DNA on Linux and Windows? (http://forum.x3dna.org/howtos/how-to-install-3dna-on-linux-and-windows/)" to get started. To verify your installation, and to get a better understanding of what 3DNA is about, please try to reproduce the results reported in the 2008 3DNA Nature Protocols paper (http://www.nature.com/nprot/journal/v3/n7/abs/nprot.2008.104.html).
HTH,
Xiang-Jun
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Thanks Xiang-Jun
I will try to do what you say me and come back to write to you , in case that I fail again, and report to forum about situation
Jorge
Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University