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Hello, I'm trying to learn to use 3DNA. I've downloaded x3dna and x3dna_setup.pl reads
To install X3DNA, do as follows:
(0) download 3DNA binary distribution for your system from URL
http://x3dna.org
(1) tar pzxvf x3dna_v2.1_Linux.tar.gz
(2) cd x3dna_v2.1/bin
(3) ./x3dna_setup
To run X3DNA, you need to set up the followings:
o the environment variable X3DNA
o add \$X3DNA/bin to your command search path
for your '$shell' shell, please add the following into $rcfile:
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$env_mtx
$path_mtxbin
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(4) type find_pair -h
for command line help -- this applies to all 3DNA binaries
Visit 3DNA homepage at URL http://x3dna.org/ for more info.
X3DNA_SETUP
when i type step 1 i get no such file or directory. can you help me get it set up? 3dna folder is in downloads folder on my mac
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See "Protocol 1 - Install Instructions of 3DNA on a Mac (http://forum.x3dna.org/jove/protocol-1/)". If you have further questions, please follow up that thread.
Note that the x3dna_setup script uses the 3DNA Linux tarball as an example. You should have downloaded a Mac OS X version.
Xiang-Jun
Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University