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Questions and answers => General discussions (Q&As) => Topic started by: sioc123456 on December 15, 2010, 02:38:31 am

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Title: Single strand DNA
Post by: sioc123456 on December 15, 2010, 02:38:31 am

How to validate the single strand structure from NMR calculation?

Title: Re: Single strand DNA
Post by: xiangjun on December 15, 2010, 08:52:10 pm

I am not sure I understand the question. 3DNA does not perform any structure validation; it simply calculates some geometrical parameters given a structure (including single stranded DNA) in PDB format. As far as (NMR) structure validation goes, have a look of CING (http://http://nmr.cmbi.ru.nl/cing/Home.html), or MolProbity (http://http://www.nmr2.buffalo.edu/nesg.wiki/MolProbity_Server).

HTH,

Xiang-Jun

Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids

Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University