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Hi Xiangjun,
Just to let you know that the web access to the X3DNA (env problem) had been solved. And I made some small progress on the web project:
http://dnaserver.rutgers.edu/~ghzheng/w3dnadev/ (http://dnaserver.rutgers.edu/~ghzheng/w3dnadev/)
There, analyzing a pdb structure with a valid ID is mostly working except for the data grids (check the download section).
As a start, rebuilding a simple fiber functions.
Many of links on the webpage just don't work and still under construction.
Here, I am writing to ask you for designing a logo for our web server. As you see, I made a temporary log on the front page, but I don't think it looks beautiful. You have a lot of experience of creating fancy pictures. Could you please make one or give some idea? Thanks.
And any suggestion on the further development?
Guohui
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Hi Guohui,
Good progress!
Try to finish 'fiber' model building first, as suggested earlier. Present the user with a full-list of available models (55), and based on selected model number, ask for sequence or just repeating unit. It is fine to have the most common A-, B-, C- and Z- (not D-, or with D-) form at the top.
I am not a designer either -- in the 3DNA forum, I have been asking for user's contributions. Until very recently have I updated the 3DNA forum logo. But honestly, I do not like the one you currently post there. I have created an alternative as attached here, which has a transparent background.
For 'analyze', you could pre-build all available NDB entries. Thus when a NDB/PDB id is supplied, the results are immediately available.
Keep good work!
Xiang-Jun
[attachment=0:pn02lib2]w3DNA_logo.gif[/attachment:pn02lib2]
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Hi Xiangjun,
Can you make a mini-version of the w3DNA_logo you made the other day? That would be used in subpages.
The size could be 50% weight 50% height of the original one.
Thanks.
Guohui
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Hi Guohui,
Regarding the mini-version of the logo, you can simply use gimp or any other image processing tools to resize it. As I said before, I am really not an artist at all. The logo I gave you was produced with a web-based logo generator so take it as a placeholder: there is certainly better ways to get it done.
Xiang-Jun
Funded by the NIH R24GM153869 grant on X3DNA-DSSR, an NIGMS National Resource for Structural Bioinformatics of Nucleic Acids
Created and maintained by Dr. Xiang-Jun Lu, Department of Biological Sciences, Columbia University