**************************************************************************** List of 163 base pairs nt1 nt2 bp name Saenger LW DSSR 1 A.U106 A.G215 U-G -- n/a cWW cW-W 2 A.U106 A.U259 U+U -- n/a cHW cM+W 3 A.U107 A.A214 U-A WC 20-XX cWW cW-W 4 A.U107 A.C260 U+C -- n/a cHW cM+W 5 A.G108 A.C213 G-C WC 19-XIX cWW cW-W 6 A.C109 A.G212 C-G WC 19-XIX cWW cW-W 7 A.G110 A.A183 G-A -- n/a cSW cm-W 8 A.G110 A.C211 G-C WC 19-XIX cWW cW-W 9 A.G111 A.A210 G-A Imino 08-VIII cWW cW-W 10 A.G112 A.C208 G-C WC 19-XIX cWW cW-W 11 A.A113 A.A207 A-A ~Sheared n/a tSH tm-M 12 A.A114 A.A206 A-A ~Sheared n/a tHS tM-m 13 A.G116 A.U205 G-U Wobble 28-XXVIII cWW cW-W 14 A.G117 A.C204 G-C WC 19-XIX cWW cW-W 15 A.G118 A.C203 G-C WC 19-XIX cWW cW-W 16 A.G119 A.U202 G-U Wobble 28-XXVIII cWW cW-W 17 A.U120 A.G201 U-G Wobble 28-XXVIII cWW cW-W 18 A.C121 A.G200 C-G WC 19-XIX cWW cW-W 19 A.A123 A.A198 A-A -- n/a tWH tW-M 20 A.C124 A.C197 C-C -- n/a tHW tM-W 21 A.C124 A.G201 C+G -- 29-XXIX tWS tW+m 22 A.G126 A.A196 G-A Imino 08-VIII cWW cW-W 23 A.C127 A.G195 C-G WC 19-XIX cWW cW-W 24 A.C128 A.G194 C-G WC 19-XIX cWW cW-W 25 A.G129 A.C193 G-C WC 19-XIX cWW cW-W 26 A.U131 A.A192 U-A WC 20-XX cWW cW-W 27 A.C132 A.G191 C-G WC 19-XIX cWW cW-W 28 A.A133 A.U190 A-U WC 20-XX cWW cW-W 29 A.G134 A.C189 G-C WC 19-XIX cWW cW-W 30 A.U135 A.A187 U+A Hoogsteen 23-XXIII cWH cW+M 31 A.A136 A.U182 A-U WC 20-XX cWW cW-W 32 A.C137 A.G181 C-G WC 19-XIX cWW cW-W 33 A.C138 A.G180 C-G WC 19-XIX cWW cW-W 34 A.A139 A.G164 A-G Sheared 11-XI tHS tM-m 35 A.A140 A.G163 A-G Sheared 11-XI tHS tM-m 36 A.G141 A.U162 G-U Wobble 28-XXVIII cWW cW-W 37 A.U142 A.A161 U-A WC 20-XX cWW cW-W 38 A.C143 A.G160 C-G WC 19-XIX cWW cW-W 39 A.U144 A.A159 U-A WC 20-XX cWW cW-W 40 A.C145 A.G158 C-G WC 19-XIX cWW cW-W 41 A.A146 A.U157 A-U WC 20-XX cWW cW-W 42 A.G147 A.U156 G-U Wobble 28-XXVIII cWW cW-W 43 A.G148 A.U155 G-U Wobble 28-XXVIII cWW cW-W 44 A.G149 A.C154 G-C WC 19-XIX cWW cW-W 45 A.G150 A.A153 G-A Sheared 11-XI tSH tm-M 46 A.A151 A.A248 A+A -- 01-I tWW tW+W 47 A.A152 A.U224 A-U -- n/a cSS cm-m 48 A.A153 A.G250 A+G Linker n/a tSS tm+m 49 A.G163 A.A178 G-A -- n/a cHH cM-M 50 A.G164 A.A178 G-A -- n/a cWH cW-M 51 A.C165 A.G175 C-G WC 19-XIX cWW cW-W 52 A.C166 A.G174 C-G WC 19-XIX cWW cW-W 53 A.U167 A.A173 U+A -- n/a tW. tW+. 54 A.U168 A.G188 U-G -- n/a tHW tM-W 55 A.G169 B.C255 G-C WC 19-XIX cWW cW-W 56 A.C170 B.G254 C-G WC 19-XIX cWW cW-W 57 A.A171 A.A172 A+A Platform n/a cSH cm+M 58 A.G181 A.A186 G+A Linker n/a tSS tm+m 59 A.A184 A.G212 A+G Linker n/a tSS tm+m 60 A.C197 A.G200 C-G -- n/a cSS cm-m 61 A.C217 A.A218 C+A Platform n/a cSH cm+M 62 A.G220 A.U253 G-U Wobble 28-XXVIII cWW cW-W 63 A.U221 A.A252 U-A WC 20-XX cWW cW-W 64 A.C222 A.G251 C-G WC 19-XIX cWW cW-W 65 A.C223 A.G250 C-G WC 19-XIX cWW cW-W 66 A.U224 A.A248 U-A rHoogsteen 24-XXIV tWH tW-M 67 A.A225 A.A226 A+A Platform n/a cSH cm+M 68 A.A226 A.U249 A-U WC 20-XX cWW cW-W 69 A.G227 A.U247 G-U Wobble 28-XXVIII cWW cW-W 70 A.U228 A.A246 U-A WC 20-XX cWW cW-W 71 A.C229 A.G245 C-G WC 19-XIX cWW cW-W 72 A.A230 A.U244 A-U WC 20-XX cWW cW-W 73 A.A231 A.U243 A-U WC 20-XX cWW cW-W 74 A.C232 A.G242 C-G WC 19-XIX cWW cW-W 75 A.A233 A.U241 A-U WC 20-XX cWW cW-W 76 A.G234 A.C240 G-C WC 19-XIX cWW cW-W 77 A.A235 A.U239 A-U WC 20-XX cWW cW-W 78 A.G254 B.C170 G-C WC 19-XIX cWW cW-W 79 A.C255 B.G169 C-G WC 19-XIX cWW cW-W 80 B.G102 B.G220 G-G -- n/a cWS cW-m 81 B.G102 B.C255 G+C -- n/a cHW cM+W 82 B.G103 B.C217 G-C WC 19-XIX cWW cW-W 83 B.G103 B.A256 G+A -- n/a cHW cM+W 84 B.A104 B.C216 A-C -- n/a cWW cW-W 85 B.A104 B.G257 A+G -- n/a cHW cM+W 86 B.A105 B.G215 A-G Imino 08-VIII cWW cW-W 87 B.A105 B.U258 A+U Hoogsteen 23-XXIII cHW cM+W 88 B.U107 B.A214 U-A WC 20-XX cWW cW-W 89 B.U107 B.U259 U+U -- n/a cHW cM+W 90 B.G108 B.C213 G-C WC 19-XIX cWW cW-W 91 B.G108 B.C260 G+C ~Hoogsteen n/a cHW cM+W 92 B.C109 B.G212 C-G WC 19-XIX cWW cW-W 93 B.G110 B.A183 G-A -- n/a cSW cm-W 94 B.G110 B.C211 G-C WC 19-XIX cWW cW-W 95 B.G111 B.U168 G+U -- n/a tSW tm+W 96 B.G111 B.A210 G-A Imino 08-VIII cWW cW-W 97 B.G112 B.C208 G-C WC 19-XIX cWW cW-W 98 B.A113 B.A207 A-A ~Sheared n/a tSH tm-M 99 B.A114 B.A206 A-A ~Sheared n/a tHS tM-m 100 B.G116 B.U205 G-U Wobble 28-XXVIII cWW cW-W 101 B.G117 B.C204 G-C WC 19-XIX cWW cW-W 102 B.G118 B.C203 G-C WC 19-XIX cWW cW-W 103 B.G119 B.U202 G-U Wobble 28-XXVIII cWW cW-W 104 B.U120 B.G201 U-G Wobble 28-XXVIII cWW cW-W 105 B.C121 B.G200 C-G WC 19-XIX cWW cW-W 106 B.A123 B.G200 A+G -- n/a tWW tW+W 107 B.C124 B.A125 C+A Platform n/a cSH cm+M 108 B.C124 B.C197 C-C -- n/a tHW tM-W 109 B.C124 B.G201 C+G -- 29-XXIX tWS tW+m 110 B.G126 B.A196 G-A Imino 08-VIII cWW cW-W 111 B.C127 B.G195 C-G WC 19-XIX cWW cW-W 112 B.C128 B.G194 C-G WC 19-XIX cWW cW-W 113 B.G129 B.C193 G-C WC 19-XIX cWW cW-W 114 B.U131 B.A192 U-A WC 20-XX cWW cW-W 115 B.C132 B.G191 C-G WC 19-XIX cWW cW-W 116 B.A133 B.U190 A-U WC 20-XX cWW cW-W 117 B.G134 B.C189 G-C WC 19-XIX cWW cW-W 118 B.U135 B.A187 U+A Hoogsteen 23-XXIII cWH cW+M 119 B.A136 B.U182 A-U WC 20-XX cWW cW-W 120 B.C137 B.G181 C-G WC 19-XIX cWW cW-W 121 B.C138 B.G180 C-G WC 19-XIX cWW cW-W 122 B.A139 B.G164 A-G Sheared 11-XI tHS tM-m 123 B.A140 B.G163 A-G Sheared 11-XI tHS tM-m 124 B.G141 B.U162 G-U Wobble 28-XXVIII cWW cW-W 125 B.U142 B.A161 U-A WC 20-XX cWW cW-W 126 B.C143 B.G160 C-G WC 19-XIX cWW cW-W 127 B.U144 B.A159 U-A WC 20-XX cWW cW-W 128 B.C145 B.G158 C-G WC 19-XIX cWW cW-W 129 B.A146 B.U157 A-U WC 20-XX cWW cW-W 130 B.G147 B.U156 G-U Wobble 28-XXVIII cWW cW-W 131 B.G148 B.U155 G-U Wobble 28-XXVIII cWW cW-W 132 B.G149 B.C154 G-C WC 19-XIX cWW cW-W 133 B.G150 B.A153 G-A Sheared 11-XI tSH tm-M 134 B.A151 B.A248 A+A -- 01-I tWW tW+W 135 B.A152 B.U224 A-U -- n/a cSS cm-m 136 B.A153 B.G250 A+G Linker n/a tSS tm+m 137 B.G163 B.A178 G-A -- n/a cHH cM-M 138 B.G164 B.A178 G-A -- n/a cWH cW-M 139 B.C165 B.G175 C-G WC 19-XIX cWW cW-W 140 B.C166 B.G174 C-G WC 19-XIX cWW cW-W 141 B.U167 B.A173 U+A -- n/a tW. tW+. 142 B.U168 B.G188 U-G -- n/a tHW tM-W 143 B.A171 B.A172 A+A Platform n/a cSH cm+M 144 B.G181 B.A186 G+A Linker n/a tS. tm+. 145 B.A184 B.G212 A+G Linker n/a tSS tm+m 146 B.C197 B.G200 C-G -- n/a cSS cm-m 147 B.A218 B.A219 A+A Platform n/a cSH cm+M 148 B.G220 B.U253 G-U Wobble 28-XXVIII cWW cW-W 149 B.U221 B.A252 U-A WC 20-XX cWW cW-W 150 B.C222 B.G251 C-G WC 19-XIX cWW cW-W 151 B.C223 B.G250 C-G WC 19-XIX cWW cW-W 152 B.U224 B.A248 U-A rHoogsteen 24-XXIV tWH tW-M 153 B.A225 B.A226 A+A Platform n/a cSH cm+M 154 B.A226 B.U249 A-U WC 20-XX cWW cW-W 155 B.G227 B.U247 G-U Wobble 28-XXVIII cWW cW-W 156 B.U228 B.A246 U-A WC 20-XX cWW cW-W 157 B.C229 B.G245 C-G WC 19-XIX cWW cW-W 158 B.A230 B.U244 A-U WC 20-XX cWW cW-W 159 B.A231 B.U243 A-U WC 20-XX cWW cW-W 160 B.C232 B.G242 C-G WC 19-XIX cWW cW-W 161 B.A233 B.U241 A-U WC 20-XX cWW cW-W 162 B.G234 B.C240 G-C WC 19-XIX cWW cW-W 163 B.A235 B.U239 A-U WC 20-XX cWW cW-W