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Author Topic: How to install 3DNA on MinGW/MSYS  (Read 14941 times)

Offline zainab fadhil

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Re: How to install 3DNA on MinGW/MSYS
« Reply #25 on: October 17, 2016, 09:49:21 pm »
I got the attached response

Offline xiangjun

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Re: How to install 3DNA on MinGW/MSYS
« Reply #26 on: October 17, 2016, 09:57:55 pm »
So you've sh instead of bash. Try the following:

Code: [Select]
echo 'export X3DNA=/c/dssrC/x3dna-v2.3' >> ~/.profile
echo 'export PATH=$X3DNA/bin:$PATH' >> ~/. profile
tail ~/.profile

Close, and start a new terminal, try:

Code: [Select]
find_pair -h
This time it should work -- report back how it goes!

Xiang-Jun
« Last Edit: October 17, 2016, 09:59:34 pm by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline zainab fadhil

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Re: How to install 3DNA on MinGW/MSYS
« Reply #27 on: October 17, 2016, 10:09:33 pm »
I got the same error. Is there a set of instructions that i can use each time i launch the program to avoid this? Or is it better to remove everything and start from the very beginning?
Thx a lot for your help Sir

Offline xiangjun

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Re: How to install 3DNA on MinGW/MSYS
« Reply #28 on: October 17, 2016, 10:35:11 pm »
Then as I mentioned before, just type:

Code: [Select]
source ~/.bashrc
Then all 3DNA v2.3 commands will be available directly. I've tried hard to help you avoid this 'extra' step. For now, it's better that you just remember to run this command.

For new users who has little background on command-line programs, the w3DNA web server may be a better choice.

Thanks for your patience.

Xiang-Jun
« Last Edit: October 17, 2016, 10:40:45 pm by xiangjun »
Dr. Xiang-Jun Lu [律祥俊]
Email: xiangjun@x3dna.org
Homepage: http://x3dna.org/
Forum: http://forum.x3dna.org/

Offline zainab fadhil

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Re: How to install 3DNA on MinGW/MSYS
« Reply #29 on: October 17, 2016, 10:41:13 pm »
So each time, I run it (after typing source ~/.bashrc) as shown in the attached picture, and it is ready to use now, right?
Image is attached.
Thanks a lot Sir for your help.
« Last Edit: October 17, 2016, 11:08:58 pm by zainab fadhil »

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.