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· Video Overview· RNA Covers
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Ha just found this http://docs.x3dna.org/images/3dna-RNA-covers.png
Thank you Xiang-Jun for collating all of the 2019 journal covers I had created using X3DNA/blocview with pymol.
I have been testing out x3dna-dssr --cartoon-block today and it is much easier!
I will be using this great new option for all future NDB requests for covers. :)
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Hi Cathy,
Thanks for producing all these RNA Journal cover images using 3DNA/blocview and PyMOL; they look nice. In addition to the post on 2019 covers, I also have an update post for 2020, see http://x3dna.org/highlights/cover-images-of-the-rna-journal-in-2020 and the image below. This post is already a bit dated since it does not include the cover of the August 2020 issue.
(http://skmatic.x3dna.org/images/RNA2020-covers-DSSR.png)
I am so glad to know that you have found the DSSR-PyMOL approach much easier to use, and producing better schematics. In addition to the --cartoon-block option you mentioned, users may also want to try the --blocview option. It is the option used for pre-calculated results of PDB entries in http://skmatic.x3dna.org.
For viewers of this thread, I'd say that the supplemental PDF (http://skmatic.x3dna.org/gkaa426-supp.pdf) is well worth reading. In concluding the DSSR-PyMOL paper (https://doi.org/10.1093/nar/gkaa426), I wrote specifically:
Finally, all results reported here are completely reproduceable (see the supplemental PDF). Any questions related to this work are welcome and will be openly addressed on the 3DNA Forum (http://forum.x3dna.org).
Best regards,
Xiang-Jun
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.