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bash# find_pair rna1.pdb stdout | analyze
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: baselist.dat ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
Time used: 00:00:00:01
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: baselist.dat ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: baselist.dat ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: misc_3dna.par ......
...... /home/esguerra/NFSsoft/X3DNA2/config/ ......
...... reading file: raster3d.par ......
Time used: 00:00:00:02
find_pair bdl084.pdb bp_info 2> msg1
analyze bp_info 2> msg2
# or by combining them as this
find_pair bdl084.pdb stdout 2> msg1 | analyze 2> msg2
Note I am using bash shell. For other shells, you may need to use something different. Of course, you could also play with some variants along the line.Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.