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Author Topic: mutate_bases error  (Read 4826 times)

Offline Charu

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mutate_bases error
« on: July 24, 2012, 10:04:16 am »
Hi as I try to mutate bases in 3DFV using the command mutate_bases 'c=Y, s=14, m=DC' 3DFV.pdb 3DFV_mut.pdb, it shows a message:
"Out of 3 qualified entries

Y: 214783647_: [@@@] ===> [@@@.@] identical residue for mutation
@:..14_: [@@@] ===> identical residue for mutation
@:214783647_: [@@@] ===> [DC.@] required chainID/resnm/mutation not specified"

But I had mutated bases earlier using the same command. Could you please help me out?

Offline xiangjun

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Re: mutate_bases error
« Reply #1 on: July 24, 2012, 02:35:49 pm »
Quote
mutate_bases 'c=Y, s=14, m=DC' 3DFV.pdb 3DFV_mut.pdb

Change comma to space, as below:
Code: [Select]
mutate_bases 'c=Y s=14 m=DC' 3DFV.pdb 3DFV_mut.pdb
Comma or semicolon is used to separate multiple mutations. I am updating command line help message to make this point clearer.

Xiang-Jun
 

 

Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.