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Questions and answers => General discussions (Q&As) => Topic started by: Shreya Ghosh on April 18, 2020, 07:29:47 pm

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Title: Generating PDB file
Post by: Shreya Ghosh on April 18, 2020, 07:29:47 pm
After creating a .par file, I tried to create a pdb.

I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

Could you please let me know how to generate a proper pdb file with the appropriate DNA backbone atoms?
Title: Re: Generating PDB file
Post by: xiangjun on April 18, 2020, 08:53:55 pm
Quote
I used the BuildNucleicAcids.py function and mentioned the DNA type and other details. It generated a pdb file without the DNA backbone atoms (attached image).

"BuildNucleicAcids.py" is not part of 3DNA. Please ask the author of the program for support.

Xiang-Jun

Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.