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Questions and answers > General discussions (Q&As)

DNA Rotation

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lrush88:
Dr. Xiang-Jun Lu,

I am running MD simulations with DNA, and I am using your program to calculate the deformation energy and to generate quality images from applied motions. I am having problems with the images that are generated, because they are rotating after some of the runs so I cannot see exactly what is happening to the DNA molecule.

                                                                    Thank you,
                                                                    L. E. Rush Jr.

xiangjun:
Thanks for using 3DNA. I am glad that you are taking advantage the visualization part of 3DNA: the other day, I blogged on blocview wondering why it has not been used that much.

Could you be more specific? Which command and options did you use? Preferably with a reproducible example?

Xiang-Jun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.