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I am having difficulty ascertaining the criterion used to classify a dinucleotide step as A-like vs. B-like vs. TA-like. What is the specific test used by the algorithm?
I cannot seem to find this in the original 3DNA paper or on the website; I sincerely hope it's not hiding in plain site.
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Check the thread "A-DNA definition (http://forum.x3dna.org/general-discussions/a-dna-definition/)".
HTH,
Xiang-Jun
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.