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Hi Dr. Lu,
I am trying to compare the structure of my ssDNA to that of standard B- and A-form DNA. I have already generated the .inp file for the analyze command. However, when I ran the script it, I received the following error message "illegal number (<=0) of base-pairs".
Sincerely,
Orn
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Hi Orn,
Thanks for using 3DNA.
The error message means your ".inp" file does not match your ".pdb" file. Try:
[pre:3dmejz8w]find_pair -s your.pdb stdout[/pre:3dmejz8w]what do you get?
If that does not help solve your puzzle, please provide your ".inp" and ".pdb" files so I can check into the details.
HTH,
Xiang-Jun
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.