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Subject / Started by	Replies / Views	Last post
MOVED: global bending of a single stranded DNA Started by xiangjun	0 Replies 1559 Views	July 18, 2016, 04:46:34 pm by xiangjun
Oddity in 3DNA Analysis of Non-Natural Nucleic Acid Started by rwmolt	2 Replies 2388 Views	June 29, 2016, 06:01:56 pm by rwmolt
3DNA for beginners - creating atomic model for RNA/DNA Started by anastasia	1 Replies 2296 Views	May 25, 2016, 10:09:21 am by mauricio esguerra
Criterion for Dinucleotide Step Being A-Like or B-Like Started by rwmolt	1 Replies 2104 Views	May 15, 2016, 08:46:28 pm by xiangjun
how to analyze base-stacking interactions with 3dna Started by shengxiehuang	2 Replies 2425 Views	May 11, 2016, 08:28:14 am by shengxiehuang
Calculating the helical axis of DNA Started by rcrehuet	4 Replies 3556 Views	May 10, 2016, 04:51:23 pm by xiangjun
Blocview with .pdb output? Started by zenita	2 Replies 3007 Views	March 30, 2016, 04:27:50 pm by xiangjun
DNA Crossing Started by jabbasaccount	5 Replies 3823 Views	March 21, 2016, 04:53:08 pm by xiangjun
rebuilding using Modified bases Started by kailsen	2 Replies 2600 Views	March 17, 2016, 01:34:52 pm by kailsen
PDB file for Gaussian Started by MingyuSun	7 Replies 5250 Views	March 05, 2016, 10:23:56 am by xiangjun
using x3dna to analyze a coarse grained model mapped into an atomistic model Started by amirhossein	7 Replies 4111 Views	March 03, 2016, 11:05:29 am by xiangjun
x3dna_ensemble is not working for hairpin loop structures Started by sudhjnu	2 Replies 2412 Views	February 11, 2016, 06:50:24 am by sudhjnu
how is Z-DNA detected by 3DNA and DSSR Started by Auffinger	2 Replies 2679 Views	November 17, 2015, 10:47:01 am by xiangjun
x3dna rebuild and standard input Started by satary	4 Replies 3408 Views	November 09, 2015, 06:22:30 am by satary
NUPARM vs 3DNA Started by prasun30	6 Replies 5401 Views	October 10, 2015, 08:59:18 am by prasun30
3DNA can recognise DNA with S atoms? Started by ccaosioc	3 Replies 2262 Views	September 24, 2015, 11:43:55 pm by xiangjun
Dinucleotide step parameters for "ideal" A-form RNA Started by Guillermo Bermejo	3 Replies 2828 Views	September 11, 2015, 06:11:45 pm by xiangjun
Major and Minor Groove Widths. Started by shasha	7 Replies 6434 Views	August 05, 2015, 10:47:37 am by xiangjun
base stacking Started by maryatx3dna	2 Replies 2761 Views	July 14, 2015, 03:03:23 am by maryatx3dna
idealizing DNA geometry of existing model Started by valpye	1 Replies 2479 Views	June 30, 2015, 11:22:15 am by xiangjun

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Created and maintained by Dr. Xiang-Jun Lu [律祥俊], Principal Investigator of the NIH grant R01GM096889
Dr. Lu is currently affiliated with the Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.

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