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x3dna-dssr -i=1ehz.pdb -o=1ehz.out
x3dna-dssr -i=4u4o.cif -o=4u4o.out
|name|id|nt|pair|multiplet|helix|stem|hairpin|iloop|junction|pseudoknot|time|
|tRNA|1ehz|76(14)|34(21)|4|2|4|3|0(0)|1|1|00:00|
|tRNA mimicry|4p5j|84(1)|37(27)|4|2|5|5|0(0)|1|1|00:00|
|Twister ribozyme|4rge (chain A)|56(0)|31(20)|4|2|6|2|0(0)|1|2|00:00|
|SAM-I riboswitch|2gis|95(1)|47(30)|8|3|7|3|3(1)|2|1|00:00|
|Cas9-RNA-DNA|4oo8|117(0)|49(43)|0|5|6|4|1(1)|0|0|00:00|
|Group I intron|1gid (chain A)|158(0)|82(48)|14|4|10|3|4(4)|1|0|00:00|
|Group II intron|3bwp|349(0)|159(104)|12|10|23|6|9(1)|2|4|00:01|
|Large ribosomal subuit|1s72|2876(5)|1459(811)|242|86|179|68|67(36)|36|3|00:31|
|E. coli ribosome-EF-TU complex|5afi|4801(53)|2383(1332)|325|134|297|116|126(66)|54|2|02:45|
|Yeast 80S ribosome|4u4o|10398(0)|4927(2705)|572|317|636|231|348(139)|120|4|06:07|
| name | id | nt | pair | multiplet | helix | stem | hairpin | iloop | junction | pseudoknot | time |
| tRNA | 1ehz | 76(14) | 34(21) | 4 | 2 | 4 | 3 | 0(0) | 1 | 1 | 00:00 |
| tRNA mimicry | 4p5j | 84(1) | 37(27) | 4 | 2 | 5 | 5 | 0(0) | 1 | 1 | 00:00 |
| Twister ribozyme | 4rge (chain A) | 56(0) | 31(20) | 4 | 2 | 6 | 2 | 0(0) | 1 | 2 | 00:00 |
| SAM-I riboswitch | 2gis | 95(1) | 47(30) | 8 | 3 | 7 | 3 | 3(1) | 2 | 1 | 00:00 |
| Cas9-RNA-DNA | 4oo8 | 117(0) | 49(43) | 0 | 5 | 6 | 4 | 1(1) | 0 | 0 | 00:00 |
| Group I intron | 1gid (chain A) | 158(0) | 82(48) | 14 | 4 | 10 | 3 | 4(4) | 1 | 0 | 00:00 |
| Group II intron | 3bwp | 349(0) | 159(104) | 12 | 10 | 23 | 6 | 9(1) | 2 | 4 | 00:01 |
| Large ribosomal subuit | 1s72 | 2876(5) | 1459(811) | 242 | 86 | 179 | 68 | 67(36) | 36 | 3 | 00:31 |
| E. coli ribosome-EF-TU complex | 5afi | 4801(53) | 2383(1332) | 325 | 134 | 297 | 116 | 126(66) | 54 | 2 | 02:45 |
| Yeast 80S ribosome | 4u4o | 10398(0) | 4927(2705) | 572 | 317 | 636 | 231 | 348(139) | 120 | 4 | 06:07 |
Note again, the time column -- here it is based on an iMac, which is much quicker than the 2011 MacBook Air used to produce the resultant table in the paper.
Created and maintained by Dr. Xiang-Jun Lu [律祥俊] (xiangjun@x3dna.org)
The Bussemaker Laboratory at the Department of Biological Sciences, Columbia University.